Some examples with the Clickme R package that lets you create interactive visualizations in the browser directly from your R session | Tiki and PluginR training

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Testing the clickme package: https://github.com/nachocab/clickme

Try zooming in and out in the figures below, click the Show names button, hover over points, filter by point names in the search box

Table of contents

Installation
1st example: rnorm(100)
2nd example: letters
3rd example: Microarray experiment

Installation

Plugin R/RR: …R… command unavailable

The path to the R command could not be found on your system. Maybe this file is inaccessible due to safe mode restrictions.
See requirements on https://doc.tiki.org/PluginR.

1st example: rnorm(100)

Plugin R/RR: …R… command unavailable

The path to the R command could not be found on your system. Maybe this file is inaccessible due to safe mode restrictions.
See requirements on https://doc.tiki.org/PluginR.

2nd example: letters

Plugin R/RR: …R… command unavailable

The path to the R command could not be found on your system. Maybe this file is inaccessible due to safe mode restrictions.
See requirements on https://doc.tiki.org/PluginR.

3rd example: Microarray experiment

Plugin R/RR: …R… command unavailable

The path to the R command could not be found on your system. Maybe this file is inaccessible due to safe mode restrictions.
See requirements on https://doc.tiki.org/PluginR.

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ERROR (E_WARNING): Undefined array key "security"
At line 394 in lib/wiki-plugins/wikiplugin_rr.php

ERROR (E_WARNING): Array to string conversion
At line 432 in lib/wiki-plugins/wikiplugin_rr.php

ERROR (E_WARNING): file_exists(): open_basedir restriction in effect. File(/usr/bin/R) is not within the allowed path(s): (/var/www/clients/client12/web73/web:/var/www/clients/client12/web73/private:/var/www/clients/client12/web73/tmp:/var/www/r.tiki.org/web:/srv/www/r.tiki.org/web:/usr/share/php5:/usr/share/php:/tmp:/usr/share/phpmyadmin:/etc/phpmyadmin:/var/lib/phpmyadmin:/dev/random:/dev/urandom)
At line 1251 in lib/wiki-plugins/wikiplugin_rr.php

ERROR (E_WARNING): file_exists(): open_basedir restriction in effect. File(/usr/local/bin/R) is not within the allowed path(s): (/var/www/clients/client12/web73/web:/var/www/clients/client12/web73/private:/var/www/clients/client12/web73/tmp:/var/www/r.tiki.org/web:/srv/www/r.tiki.org/web:/usr/share/php5:/usr/share/php:/tmp:/usr/share/phpmyadmin:/etc/phpmyadmin:/var/lib/phpmyadmin:/dev/random:/dev/urandom)
At line 1251 in lib/wiki-plugins/wikiplugin_rr.php

ERROR (E_WARNING): file_exists(): open_basedir restriction in effect. File(/bin/R) is not within the allowed path(s): (/var/www/clients/client12/web73/web:/var/www/clients/client12/web73/private:/var/www/clients/client12/web73/tmp:/var/www/r.tiki.org/web:/srv/www/r.tiki.org/web:/usr/share/php5:/usr/share/php:/tmp:/usr/share/phpmyadmin:/etc/phpmyadmin:/var/lib/phpmyadmin:/dev/random:/dev/urandom)
At line 1251 in lib/wiki-plugins/wikiplugin_rr.php

ERROR (E_WARNING): file_exists(): open_basedir restriction in effect. File(/usr/bin/R ) is not within the allowed path(s): (/var/www/clients/client12/web73/web:/var/www/clients/client12/web73/private:/var/www/clients/client12/web73/tmp:/var/www/r.tiki.org/web:/srv/www/r.tiki.org/web:/usr/share/php5:/usr/share/php:/tmp:/usr/share/phpmyadmin:/etc/phpmyadmin:/var/lib/phpmyadmin:/dev/random:/dev/urandom)
At line 1259 in lib/wiki-plugins/wikiplugin_rr.php

ERROR (E_WARNING): Undefined array key "security"
At line 394 in lib/wiki-plugins/wikiplugin_rr.php

ERROR (E_WARNING): Array to string conversion
At line 432 in lib/wiki-plugins/wikiplugin_rr.php

ERROR (E_WARNING): file_exists(): open_basedir restriction in effect. File(/usr/bin/R) is not within the allowed path(s): (/var/www/clients/client12/web73/web:/var/www/clients/client12/web73/private:/var/www/clients/client12/web73/tmp:/var/www/r.tiki.org/web:/srv/www/r.tiki.org/web:/usr/share/php5:/usr/share/php:/tmp:/usr/share/phpmyadmin:/etc/phpmyadmin:/var/lib/phpmyadmin:/dev/random:/dev/urandom)
At line 1251 in lib/wiki-plugins/wikiplugin_rr.php

ERROR (E_WARNING): file_exists(): open_basedir restriction in effect. File(/usr/local/bin/R) is not within the allowed path(s): (/var/www/clients/client12/web73/web:/var/www/clients/client12/web73/private:/var/www/clients/client12/web73/tmp:/var/www/r.tiki.org/web:/srv/www/r.tiki.org/web:/usr/share/php5:/usr/share/php:/tmp:/usr/share/phpmyadmin:/etc/phpmyadmin:/var/lib/phpmyadmin:/dev/random:/dev/urandom)
At line 1251 in lib/wiki-plugins/wikiplugin_rr.php

ERROR (E_WARNING): file_exists(): open_basedir restriction in effect. File(/bin/R) is not within the allowed path(s): (/var/www/clients/client12/web73/web:/var/www/clients/client12/web73/private:/var/www/clients/client12/web73/tmp:/var/www/r.tiki.org/web:/srv/www/r.tiki.org/web:/usr/share/php5:/usr/share/php:/tmp:/usr/share/phpmyadmin:/etc/phpmyadmin:/var/lib/phpmyadmin:/dev/random:/dev/urandom)
At line 1251 in lib/wiki-plugins/wikiplugin_rr.php

ERROR (E_WARNING): file_exists(): open_basedir restriction in effect. File(/usr/bin/R ) is not within the allowed path(s): (/var/www/clients/client12/web73/web:/var/www/clients/client12/web73/private:/var/www/clients/client12/web73/tmp:/var/www/r.tiki.org/web:/srv/www/r.tiki.org/web:/usr/share/php5:/usr/share/php:/tmp:/usr/share/phpmyadmin:/etc/phpmyadmin:/var/lib/phpmyadmin:/dev/random:/dev/urandom)
At line 1259 in lib/wiki-plugins/wikiplugin_rr.php

ERROR (E_WARNING): Undefined array key "security"
At line 394 in lib/wiki-plugins/wikiplugin_rr.php

ERROR (E_WARNING): Array to string conversion
At line 432 in lib/wiki-plugins/wikiplugin_rr.php

ERROR (E_WARNING): file_exists(): open_basedir restriction in effect. File(/usr/bin/R) is not within the allowed path(s): (/var/www/clients/client12/web73/web:/var/www/clients/client12/web73/private:/var/www/clients/client12/web73/tmp:/var/www/r.tiki.org/web:/srv/www/r.tiki.org/web:/usr/share/php5:/usr/share/php:/tmp:/usr/share/phpmyadmin:/etc/phpmyadmin:/var/lib/phpmyadmin:/dev/random:/dev/urandom)
At line 1251 in lib/wiki-plugins/wikiplugin_rr.php

ERROR (E_WARNING): file_exists(): open_basedir restriction in effect. File(/usr/local/bin/R) is not within the allowed path(s): (/var/www/clients/client12/web73/web:/var/www/clients/client12/web73/private:/var/www/clients/client12/web73/tmp:/var/www/r.tiki.org/web:/srv/www/r.tiki.org/web:/usr/share/php5:/usr/share/php:/tmp:/usr/share/phpmyadmin:/etc/phpmyadmin:/var/lib/phpmyadmin:/dev/random:/dev/urandom)
At line 1251 in lib/wiki-plugins/wikiplugin_rr.php

ERROR (E_WARNING): file_exists(): open_basedir restriction in effect. File(/bin/R) is not within the allowed path(s): (/var/www/clients/client12/web73/web:/var/www/clients/client12/web73/private:/var/www/clients/client12/web73/tmp:/var/www/r.tiki.org/web:/srv/www/r.tiki.org/web:/usr/share/php5:/usr/share/php:/tmp:/usr/share/phpmyadmin:/etc/phpmyadmin:/var/lib/phpmyadmin:/dev/random:/dev/urandom)
At line 1251 in lib/wiki-plugins/wikiplugin_rr.php

ERROR (E_WARNING): file_exists(): open_basedir restriction in effect. File(/usr/bin/R ) is not within the allowed path(s): (/var/www/clients/client12/web73/web:/var/www/clients/client12/web73/private:/var/www/clients/client12/web73/tmp:/var/www/r.tiki.org/web:/srv/www/r.tiki.org/web:/usr/share/php5:/usr/share/php:/tmp:/usr/share/phpmyadmin:/etc/phpmyadmin:/var/lib/phpmyadmin:/dev/random:/dev/urandom)
At line 1259 in lib/wiki-plugins/wikiplugin_rr.php

ERROR (E_WARNING): Undefined array key "security"
At line 394 in lib/wiki-plugins/wikiplugin_rr.php

ERROR (E_WARNING): Array to string conversion
At line 432 in lib/wiki-plugins/wikiplugin_rr.php

ERROR (E_WARNING): file_exists(): open_basedir restriction in effect. File(/usr/bin/R) is not within the allowed path(s): (/var/www/clients/client12/web73/web:/var/www/clients/client12/web73/private:/var/www/clients/client12/web73/tmp:/var/www/r.tiki.org/web:/srv/www/r.tiki.org/web:/usr/share/php5:/usr/share/php:/tmp:/usr/share/phpmyadmin:/etc/phpmyadmin:/var/lib/phpmyadmin:/dev/random:/dev/urandom)
At line 1251 in lib/wiki-plugins/wikiplugin_rr.php

ERROR (E_WARNING): file_exists(): open_basedir restriction in effect. File(/usr/local/bin/R) is not within the allowed path(s): (/var/www/clients/client12/web73/web:/var/www/clients/client12/web73/private:/var/www/clients/client12/web73/tmp:/var/www/r.tiki.org/web:/srv/www/r.tiki.org/web:/usr/share/php5:/usr/share/php:/tmp:/usr/share/phpmyadmin:/etc/phpmyadmin:/var/lib/phpmyadmin:/dev/random:/dev/urandom)
At line 1251 in lib/wiki-plugins/wikiplugin_rr.php

ERROR (E_WARNING): file_exists(): open_basedir restriction in effect. File(/bin/R) is not within the allowed path(s): (/var/www/clients/client12/web73/web:/var/www/clients/client12/web73/private:/var/www/clients/client12/web73/tmp:/var/www/r.tiki.org/web:/srv/www/r.tiki.org/web:/usr/share/php5:/usr/share/php:/tmp:/usr/share/phpmyadmin:/etc/phpmyadmin:/var/lib/phpmyadmin:/dev/random:/dev/urandom)
At line 1251 in lib/wiki-plugins/wikiplugin_rr.php

ERROR (E_WARNING): file_exists(): open_basedir restriction in effect. File(/usr/bin/R ) is not within the allowed path(s): (/var/www/clients/client12/web73/web:/var/www/clients/client12/web73/private:/var/www/clients/client12/web73/tmp:/var/www/r.tiki.org/web:/srv/www/r.tiki.org/web:/usr/share/php5:/usr/share/php:/tmp:/usr/share/phpmyadmin:/etc/phpmyadmin:/var/lib/phpmyadmin:/dev/random:/dev/urandom)
At line 1259 in lib/wiki-plugins/wikiplugin_rr.php

ERROR (E_WARNING): file_put_contents(temp/cacher.tiki.org/mod-28c4b5877866e0bfb00635855a8049d9): Failed to open stream: No such file or directory
At line 1209 in lib/modules/modlib.php

ERROR (E_WARNING): file_put_contents(temp/cacher.tiki.org/mod-9b586c0db26d271a1076bbf3972f1396): Failed to open stream: No such file or directory
At line 1209 in lib/modules/modlib.php

ERROR (E_WARNING): file_put_contents(temp/cacher.tiki.org/mod-bf51813535e55a3aea8134abc9f0a9b5): Failed to open stream: No such file or directory
At line 1209 in lib/modules/modlib.php

ERROR (E_WARNING): file_put_contents(temp/cacher.tiki.org/mod-803b3d78f9c6201f966347509a52a27a): Failed to open stream: No such file or directory
At line 1209 in lib/modules/modlib.php